API Reference

Core Modules

disease.query	Provides query handler class, which receives and responses to user search queries.
disease.schemas	Contains data models for representing VICC normalized disease records.

Database Modules

disease.database.database	Provide core database classes and helper methods.
disease.database.dynamodb	Provide DynamoDB client.
disease.database.postgresql	Provide PostgreSQL client.

ETL Modules

disease.etl.base	Provides abstract base classes for source ETL procedures.
disease.etl.update	Provide functions to perform Disease Normalizer updates.
disease.etl.do	Get Human Disease Ontology data.
disease.etl.mondo	Get Mondo Disease Ontology data.
disease.etl.ncit	Get NCIt disease data.
disease.etl.omim	Get OMIM disease data.
disease.etl.oncotree	Get OncoTree data.
disease.etl.merge	Create concept groups and merged records.